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Bioinformatics in python

bioinformatics
Q&A

Getting started in Bioinformatics: A step-by-step guide.

A guide and advice on how to get started, or how to transition into Bioinformatics for people with biology or programming backgrounds.

By rebelCoder, 5 months4 months ago
Bioinformatics
Tips & Tricks

Tips & Tricks: Hamming Distance

Let’s look at how we can program Hamming Distance algorithm in three different ways.

By rebelCoder, 5 months5 months ago
Bioinformatics Tools

Bioinformatics Tools Programming in Python with Qt. Part 2.

DNA Engine project structure and class setup.

By rebelCoder, 7 months7 months ago
Bioinformatics Tools

Bioinformatics Tools Programming in Python with Qt. Part 1.

In Part 1 we look at PyQT setup, Qt Designer, UI converter tool and write a test application.

By rebelCoder, 8 months7 months ago
From Python To Rust Series

From Python to Rust: Part 1.

In this series of articles, we will explore a young and very exciting programming language — Rust. We will see how Rust can help us to speed up some of our existing and future Python code. Many agree, that the key features of Python are its simplicity and readability. Let’s Read more…

By rebelCoder, 8 months7 months ago
DNA Toolkit Series

DNA Toolkit Part 5, 6 & 7: Open Reading Frames, Protein Search in NCBI database

In this article, we conclude our work on a minimal set of functions to work with DNA. We will add the last three functions that will help us to search for proteins in DNA sequences by generating reading frames. We will also apply our code to a real piece of Read more…

By rebelCoder, 9 months8 months ago
DNA Toolkit Series

DNA Toolkit Part 4: Translation, Codon Usage

In this article we are taking a look at DNA Codon table and adding a Translation and Codon Usage functions to our DNA Toolkit.

By rebelCoder, 10 months8 months ago
DNA Toolkit Series

DNA Toolkit Part 3: GC Content Calculation

In this article we add GC Content Calculation functions to the DNA Toolkit

By rebelCoder, 10 months8 months ago
Bioinformatics Tools

Let’s set up a code editor for Python and Bioinformatics

In this article we install and set-up VSCode/VSCodium editor and a few plugins to make running any code easy, with just a key combination.

By rebelCoder, 10 months8 months ago
DNA Toolkit Series

DNA Toolkit Part 2: Transcription and Reverse Complement

Welcome back! Today we continue working on our DNA Toolkit project. In our last article, we created the first two functions: validate_seq and nucleotide_frequency. We are not going to change the file structure, though we will add two more functions and one data structure. The functions we add today will Read more…

By rebelCoder, 10 months8 months ago

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Categories
  • Bioinformatics Tools (3)
  • DNA Toolkit Series (6)
  • From Python To Rust Series (3)
  • Python with Qt Series (2)
  • Q&A (1)
  • Thought dump (1)
  • Tips & Tricks (1)
Recommended Books:
Effective Python: 90 Specific Ways to Write Better Python

Buy: US / UK
Python Algorithms: Mastering Basic Algorithms in the Python Language

Buy: US / UK
Bioinformatics Algorithms: Design and Implementation in Python

Buy: US / UK
Algorithms on Strings, Trees, and Sequences: Computer Science and Computational Biology

Buy: US / UK

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