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Bioinformatics, Programming and Open-Source Science

bioinformatics podcast

Getting started in Bioinformatics: A step-by-step guide.

A guide and advice on how to get started, or how to transition into Bioinformatics for people with biology or programming backgrounds.

By rebelCoder, 2 yearsAugust 31, 2020 ago

Tips & Tricks: Hamming Distance

Let’s look at how we can program Hamming Distance algorithm in three different ways.

By rebelCoder, 2 yearsAugust 16, 2020 ago

Bioinformatics Tools Programming in Python with Qt. Part 2.

DNA Engine project structure and class setup.

By rebelCoder, 2 yearsJune 24, 2020 ago

From Python to Rust: Part 3.

Python dictionary, Rust HashMap and a DNA Reverse Complement function.

By rebelCoder, 2 yearsJune 23, 2020 ago

Bioinformatics Tools Programming in Python with Qt. Part 1.

In Part 1 we look at PyQT setup, Qt Designer, UI converter tool and write a test application.

By rebelCoder, 2 yearsJune 8, 2020 ago

From Python to Rust: Part 2.

Strings, Functions, Random number generation and Rust crates/modules.

By rebelCoder, 2 yearsJune 4, 2020 ago

From Python to Rust: Part 1.

In this series of articles, we will explore a young and very exciting programming language — Rust. We will see how Rust can help us to speed up some of our existing and future Python code. Many agree, that the Read more…

By rebelCoder, 2 yearsMay 17, 2020 ago

DNA Toolkit Part 5, 6 & 7: Open Reading Frames, Protein Search in NCBI database

In this article, we conclude our work on a minimal set of functions to work with DNA. We will add the last three functions that will help us to search for proteins in DNA sequences by generating reading frames. We Read more…

By rebelCoder, 2 yearsApril 26, 2020 ago

DNA Toolkit Part 4: Translation, Codon Usage

In this article we are taking a look at DNA Codon table and adding a Translation and Codon Usage functions to our DNA Toolkit.

By rebelCoder, 2 yearsApril 5, 2020 ago

DNA Toolkit Part 3: GC Content Calculation

In this article we add GC Content Calculation functions to the DNA Toolkit

By rebelCoder, 2 yearsApril 4, 2020 ago

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